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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Taking Stock of the Known and Unknown Microbial Space
Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite all … information is still computationally derived. Experimental studies on cultivated isolates are needed to convert the …
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Natural Prodcast Episode 15: Katherine Duncan
… because I really enjoyed the review that you wrote with Marnix on putting that stuff together. It’s been kind … once you’ve isolated them, you would have to do in situ studies in Antarctica. So I guess we’ll never know if we’ve … a subset of molecules that will fly on an analytical instrument and be detected. Dan Udwary: You’re making me so …
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JGI@25: From Life at the Extremes to Editing Genomes
National Laboratory – jointly the Nobel Prize in Chemistry with Emmanuelle Charpentier of the Max Planck Institute! … For the past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining … Working with the JGI, Banfield is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples …
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MGM Workshop at Fisabio Summer School 2025
… research results in genomics, metagenomics and the human microbiome. The workshop will train participants in … training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Natalia Ivanova and …
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Microbial Genomics & Metagenomics (MGM) Workshop
… highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational … sequence data and enables the user to analyze these data with existing bioinformatic methods to bridge the gap from …
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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in Populus
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… of California Santa Barbara. So plants don’t break down without a fight, but it’s an important battle to fine-tune. … the energy they store.      Since 2012, O’Malley has worked with the JGI to understand the enzymes these organisms use … processing. “So if you peer inside a poop sample, or a rumen sample, you’re going to find beautiful diversity.” …
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JGI Accepts 17 Proposals for Community Science Program
Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved proposals … State University and colleagues aim to understand how soil microbiomes in fire-adapted ecosystems respond to low and … a full-scale submission. She aims to look at the microbial methane cycle in terrestrial geothermal environments. …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
… facilitates accurate and insightful comparative genomics studies. …
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Natural Prodcast Episode 14: Nigel Mouncey
… to a regular schedule. I’m going to kick things off today with my interview with the Director of the Joint Genome Institute and head of … I hope you’ll be listening. But this week, here’s my chat with my boss, JGI Director Nigel Mouncey. DAN: I’ll start by …
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