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Soil virus offers insight into maintaining microorganisms
… The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome … to another, which can have a significant impact on the microbial communities within soil. Using metagenomics, … another DOE Office of Science User Facility, through a single proposal.  …
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The Integrated Microbial Genome Resource of Analysis
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High-resolution phylogenetic microbial community profiling
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A Comparison of Microbial Genome Web Portals
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Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … ( 2017 ), have identified many more genes than found in the single reference genome, including traits useful for …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights … cycle carbon in changing conditions. The products of photosynthesis are easy to point out. Plants, algae and … structure of the protein related to its function inside the cell, Grosjean used the JGI-developed  guideRNA and Sequence …
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Webinar: SIP technologies at EMSL and JGI
… Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … go from start to finish, i.e., QC to separation to library sequencing and assembly. Like others, our turnaround time … don’t have a great way to resolve root respiration from microbial processes, but we’re not mixing the tracer with …
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Green Algae Reveal One mRNA Encodes Many Proteins
… eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a single … a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … directly measure environmental or biological samples (like cell media or lake water) without doing a metabolite … Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell counts or …
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Axel Visel
… Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … for large-scale in situ gene expression analysis in multicellular organisms. During his postdoctoral training at … methods for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of …
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A single-cell genomics pipeline for environmental microbial eukaryotes
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