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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… a genus of just under 400 mosses that can carry up to 25 times their dry weight in water, makes up the … these sex chromosomes and their role in sphagnum’s survival opens up a new avenue to explore for protecting these ecosystems. … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US Department of …
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Supercharging SIP in the Fungal Hyphosphere
… communities, with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope …
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Tanja Woyke
… products and their derivatives during her Ph.D. in Microbiology at the Eberhard Karls University Tübingen (Germany), … postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research was the symbiont … User Programs … Education … Awards and Service … Selected Publications …
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Pinning Down a Piece of Photosynthesis
… and longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they inventoried a swath of blueprints to find parts … Synechocystis . Working with  Synechocystis also opened up options for studying modified versions of this protein domain. In an array of …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… type of food that was in the contaminated aquifer in 2007 to achieve this goal. In less than four years, parts of … of the groundwater were nearly cleared of contamination. By 2020, the water was at contamination levels that are below the …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic elements ( Nature Biotechnology , 2024), and iPHoP , an integrated machine learning framework …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis group. … Sanger Institute and Cambridge University University in 2005, where he studied RNA editing and cancer genetics. Dr. … board member for Scientific Reports … Education … Selected Publications … Awards and Service …
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A Complex Confection Decoded: Sugarcane Reference Genome
… from the genome could help scale sustainable sugarcane conversion technologies for  biofuels and other bioproducts. … partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane … .   … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Frontiers Group, the National Science Foundation (MCB-1244557 to J.A.D.) and the Lawrence Berkeley National … Focus Area funded by the US Department of Energy (DE-AC02-05CH11231 to J.F.B.). The work ( proposal doi: …
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Frederik Schulz
Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His … of Applied Sciences Mannheim (Germany) M.Sc. Molecular Microbiology, University of Vienna (Austria) PhD Microbial … academic achievements (2008) … Education … Selected Publications … Awards and Service …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … for the overall design and implementation of computational biology and bioinformatics approaches in support of meeting … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …
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Tracing the Evolution of Shiitake Mushrooms
… from around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 … of Lentinula species.The Lentinula genus diverged roughly 28 million years ago, when the largest mammal … supported by the NSF awards DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of Energy award 0000238431 to …
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