Results

DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … allow simultaneous measurement of multiple samples in a single experiment — and integrated these data with … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Dan Rokhsar
… and led the computational efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … Project, Professor Dr. Rokhsar ’s team has continued to develop computational methods applicable to the diverse …
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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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Chromosome-scale Genome Assembly of the Most Abundant Ectomycorrhizal Fungus Cenococcum Geophilum Reveals Massive TE Expansion and RIP Defense Mechanism
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Taking Stock of the Known and Unknown Microbial Space
… help map out microbial diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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A Complex Confection Decoded: Sugarcane Reference Genome
… toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … a custom pipeline and techniques. High quality primary assembly not only includes a full representation of the …
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A telomere-to-telomere genome assembly resource of Bipolaris sorokiniana, the fungal pathogen causing spot blotch and common root rot diseases in barley and wheat
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … Jason Stajich at the University of California, Riverside and Igor Grigoriev from the U.S. Department of Energy … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … of years. However, these enzymes are often loosely understood, leaving potential targets for crop engineering … FastTree and identified 62 distinct AT groups. However, no single AT group was conserved across all species — a …
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A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β‑Linked GlcNAc Polysaccharides
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A User-Centered Approach to Accessing JGI Data
… through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data … as plants (via Phytozome) or fungi ( MycoCosm ). “We have made a concerted effort to create a common set of ‘baseline … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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