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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… They hypothesized that certain gene families — including fungal genes horizontally transferred — contributed to the … plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for …
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Emiley Eloe-Fadrosh
… pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging … analysis strategy for stable isotope probing metagenomics. mSystems . 8(4):e0128022. Kelliher JM, et al. … Nature 536 , 425-430. Eloe-Fadrosh EA, et al. 2016. Metagenomics uncovers gaps in amplicon-based detection of …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… about a multi-year study his student conducted involving fungal rust pathogen resistance. Just as the common gardens … and environments. The long-term investments in both the genomics and gardens are helping these shrubby grasses …
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A User-Centered Approach to Accessing JGI Data
… requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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User Support Analysis Group
… focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of …
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A Model System for Perennial Grasses
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  Recently , researchers used population genomics to find that while archaeal hitchhikers may often …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research … 8(1), 2184 doi: 10.1038/s41467-017-02292-8 Genetics and Genomics of Brachypodium. 2016 Vogel, J.P. Ed., Springer, … Selected Publications …
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Gut Fungi: Unexpected Source of Novel Chemicals
… . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this … , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of … only by aerobic fungi. In order to identify more of the fungal natural products, O’Malley and her team plan to use …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated … viruses or single host cells harboring them — could be a future option to discovering giant viruses. Further, … these viruses via their genomes, paving the way for future targeted isolation efforts and subsequent detailed …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His … of community-building efforts in the field of viral ecogenomics. For this role, Dr. Roux can rely on more than 10 … years of expertise in the fields of virus ecology and virus genomics, where he has engaged in collaborative, …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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