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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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You Can Move, But You Can’t Hide
Researchers at the JGI develop a tool to quickly and accurately identify mobile genetic … to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … like viruses and plasmids drive microbial processes and evolution. This is because MGEs can affect a microbe’s …
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of Oak Ridge National Laboratory and … is an Assistant Professor in the Department of Ecology, Evolution and Marine Biology at UCSB, where she leads a …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of … Without this prediction step, numerous genes for antibiotic resistance and secondary metabolism would have been …
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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees to grow. However, fire changes the microbes within the soil. … was possible to identify specific attributes — such as heat resistance, fast growth rates, and an ability to metabolize …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Nigel Mouncey
… the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He has a wealth of managerial experience from almost 20 years in the … World Bio Markets Bio-based Business Person of the Year Publications Committee Chair (2016- ), Society for …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute … Metabolism in Model Soil Ecosystems,” uses a combination of experimental approaches and large-scale data analysis to …
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