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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … the potential to expand opportunities for bioenergy and bioengineering applications. “We worked with 10 species ranging …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … carbon cycle. All methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and …
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who translate genomic information into biological function. Through our CSP … into these functions allows researchers to use them for engineering applications in support of advancing the …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like … growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the … three groups focused on HTP DNA design and assembly, strain engineering and bioinformatic tool development/data analysis … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … The Sorghum bicolor pangenome resource on Phytozome …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … subsequent DNA amplification and sequencing steps. Testing the HCR-FISH+FACS targeted pipeline on North Sea … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Hydrothermal Vents and International Science: A Postdoc’s Visit to the JGI
… fellow at the Biological and Environmental Sciences and Engineering Division at King Abdullah University of Science and Technology (KAUST) in Saudi Arabia. …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have … into stemming methane-emissions as well as efficient engineering of biofuels. Since 2010, the JGI has partnered … microbes gave researchers access to a collection of novel enzymes — many of which contained interesting properties in …
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Learning to Look
… Machine learning approach significantly expands inovirus … “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … small genomes can be easily manipulated through genetic engineering, inoviruses are used for several …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … ecologists to learn more about the diversity of microbial enzymes, which could have a plethora of potential … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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