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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … one of the two main branches of fungi); another is a photosynthetic microbe, tucked in the fungus’ tissue. If you’re a …
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What Happens To a Rainforest When You Dial Up Drought?
Rainforests store a big fraction of all the carbon on Earth, and soil microbes play a key role in …
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Ray Turner Completes Last Tour of Lab Duty at JGI
For the last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. … as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the … occupy more space on Earth than any other ecosystem. Therefore, understanding the microbial activity that dominates … greatly contributes to our larger understanding of carbon and other nutrient cycles on a global scale. Summary …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … relevant to living on a changing planet. Transcript for Audio Two special days occur in April: the 50th …
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Triggering Morel Fruiting
A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the following guest …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The … metabolites are produced by groups of genes known as biosynthetic gene clusters (BGCs.) As reported in the recent … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 2
Gary Trubl, a virologist and postdoc at Lawrence Livermore National Laboratory, is using bioinformatics and isotopes to track how viruses influence the flow of carbon in permafrost.  …
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Data Ecosystem
To expand access to integrated data, improve tools and … cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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