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First Monoploid Reference Sequence of Sugarcane
… a reference for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of … assembled a first monoploid reference sequence using a targeted approach that focused on the gene rich part of the … polyploid sugarcane genome now underway as part of the JGI Community Science Program (CSP), a critical factor in …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Soil virus offers insight into maintaining microorganisms
… identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, researchers have … of crystalized samples cloned and synthesized by the JGI, scientists have begun the complex process of uncovering the … second only to cellulose.  Chitin is also a common food source for microbes living within soil. So, the chitosanase …
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High-resolution metagenomics targets specific functional types in complex microbial communities
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Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery
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Tanja Woyke Elected to American Academy of Microbiology
… Genomics and Systems Biology Division of the Lab’s Biosciences Area since 2018. Woyke also holds appointments as … has been groundbreaking. The JGI is most fortunate to have scientists of Dr. Woyke’s caliber support the JGI User community in accessing our resources and help them to push the boundaries of energy …
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A Collaboration to Improve Plant Genome Annotations Across Species
… JGI Plant Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to … *The HudsonAlpha Genome Sequencing Center works with scientists at the JGI a lot. In fact, HudsonAlpha Faculty … one of which is sweet sorghum Rio from a JGI Community Science Program project and another is Lupinus albus from a …
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Fungus Fuels Tree Growth
… growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual … effort to understand its influence on the plant, a team of scientists studied what happens to the tree’s physical … as secreted proteins. However,  M. elongata  seems to encourage the plant to have leakier cell walls and weaker …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of … for genome sequencing, or only “true fungi”? A(nswer): Our focus is on fungi, algae, plants, and the microbial … MycoCosm and Fungal Program pages ( https://jgi.doe.gov/our-science/science-programs/fungal-genomics/ ). You can also …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … DSMZ overall, resulting not only in a valuable sequence resource to complement DSMZ’s vast strain resource, but also …
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The …
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