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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… food webs in cold, but fecund polar waters. “A lot of our food comes from the North Atlantic, North Pacific and … that we all depend on,” said Mock. Mock and the other lead scientists had embarked on the study — a collaboration of … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Nick Everson
… Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human Resources, Facilities, IT, Shipping and Receiving, Lab … space and facilities, finance and procurement, human resources, safety, and administrative activities. The Deputy of …
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User Executive Committee
… The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical capabilities offered, proposal …
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The Power of One, Amplified
… single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting … genomes then amplified and sequenced individually, offering scientists the opportunity to apply population genomics … microbial populations. The work appeared in The ISME Journal . Members of the Dunfield lab collected samples from …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… bioeconomy, including, potentially, methane as an energy source.  Until recently, our understanding of these … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of a microbial community out in its natural environment, scientists have shown at least two microorganisms from …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and the Innovative Genomics Institute.  The Science Researchers report the discovery of miniature … of thermostable Cas9 genes . The work also used resources at the National Energy Research Scientific Computing …
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A Model System for Perennial Grasses
… hallii genomes offer insights to drought tolerance. The Science Researchers have developed a genomic model to study … including researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, report the … of nearly a decade of work to develop genomic resources for drought tolerance in perennial grasses. The team …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … Applications group to operate a similar single-cell genomics pipeline that provides JGI users access to the … Probing (SIP) Metagenomics pipeline  that reveals in situ functional activities of specific microbial groups within …
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Massie S. Ballon
… S. Ballon is the Communications and Outreach Manager at the JGI. Through multi-platform stories and outreach efforts, … aims to broaden awareness of and access to JGI public resources and the DOE mission, as well as help cultivate the … collaborators.  Ms. Ballon is a molecular biology-trained science communicator with extensive experience shaping …
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Green Algae Reveal One mRNA Encodes Many Proteins
… reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples … zofingiensis . “I was scrutinizing the genes of one of our species of algae and kept seeing what looked like … and first author of the article. The research team included scientists at the University of California (UC), Berkeley, …
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … limits the ability of researchers to accurately perform functional assessment, host prediction, and phylogenetic …
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