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EnZymClass: Substrate specificity prediction tool of plant acyl-ACP thioesterases based on ensemble learning
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Rhizosphere and detritusphere habitats modulate expression of soil N-cycling genes during plant development
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Mapping the Earth’s Hidden Fungal Kingdom
… past billion years, fungi have spread quietly throughout our planet. From the deepest ocean floors to Antarctic … estimated 2–6 million species — dwarfing the diversity of plants. To put this evolutionary timescale in perspective, … (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have been at the forefront of …
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DOE Metrics
… Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY 2026 Total   … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on …
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Len Pennacchio
… and capabilities we offer JGI users to help advance their science. … a vision for future technical JGI directions for DOE User science. … of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in Genome Biology & … Fellow of the American Association for the Advancement of Science (AAAS) 2020- National Advisory Council, National …
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A Sorghum Pangenome Opens More Doors to Discovery
… and thousands of resequenced sorghum varieties, a resource for breeders and researchers to harness the traits … addition to bolstering sorghum fields, understanding this plant eventually offers avenues for translating its … Shakoor, a research scientist at Donald Danforth Plant Science Center.  This work is the result of an international …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
… Faculty interested in developing proposals with JGI and Biosciences Area researchers should contact David Gilbert …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are … such as heat waves, droughts and floods. The planet’s resources are being stretched by a growing human population and … by the JGI in 2009 and it is considered to be a Flagship Plant. By uncovering and characterizing the mechanisms …
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Genome Sequence of the Chestnut Blight Fungus Cryphonectria parasitica EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen.
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High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods
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A comparative genomics screen identifies a Sinorhizobium meliloti 1021 sodM-like gene strongly expressed within host plant nodules
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Phylogenomics reveals convergent evolution of red-violet coloration in land plants and the origins of the anthocyanin biosynthetic pathway
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