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Gamete expression of TALE class HD genes activates the diploid sporophyte program in Marchantia polymorpha
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Mindfully Moving JGI
… Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years … Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained … week up and operating is a great story and a testament to our extensive move planning efforts!” cheered JGI’s …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… (MBIB) Division, and Energy Storage & Distributed Resources Division at Berkeley Lab.  Building on the momentum … from UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on … the Advanced Light Source, future collaborative research projects were also intensively discussed. The Berkeley …
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Doubling Down on Known Protein Families
… cannot be cultivated in lab settings. Since each microbial community has its own unique makeup of microbe players and … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire genetic … diversity has doubled, but in reality it could be three or four or five or tenfold more out there.” Digging Further into …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of … the zoospores were then sent to the JGI for whole genome sequencing using the Illumina platform. Unfortunately, both … the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… catalyzed by microbial communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP … in activity as well; at any given time, many species in a community may be in ‘low power mode’, where they do very … process. The isotope labeling incubations can take hours to months, followed by weeks of tricky, laborious lab …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Complete Genome Sequence of the Plant Growth-Promoting Endophyte Burkholderia phytofirmans Strain PsJN
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Genome sequence of the plant growth promoting endophytic yeast Rhodotorula graminis WP1
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Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species
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Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism
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A User-Centered Approach to Accessing JGI Data
… across the files that are submitted by each scientific program,” he said. “If each kingdom submits the same … limited to: Public data: datasets associated with completed projects that are eligible for public release, have … and NMDC? A: We have reached out to KBase regarding use of our search API. They have expressed an interest in using …
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