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Uncovering Novel Genomes from Earth’s Microbiomes
… by 44%, is now available and  described November 9, 2020 in  Nature Biotechnology . Known as the GEM (Genomes from … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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From Competition to Cooperation
… co-opted into symbiotic functions. Recently published in  Nature Communications , the work was led by a consortium of … of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231 within the framework of the Mycorrhizal … of Forest Soil Ecosystems project (CSP # 570) and the 1000 Fungal Genome projects (CSP # 662 & 1974). This …
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Plant-Microbial Interactions Group
… and fungal expression patterns in root cross-sections. … 10.1038/s41579-020-0381-4 10.1038/s41396-020-0637-z … 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… are.” But according to a new study published September 16, 2021 in Nature Communications , warmer waters and communities … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Access to Rock Star Scientists
Through the JGI-UC Merced Genomics Internship, graduate students Candace … of the internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of … lab. My favorite thing is the mentorship provided by JGI. Everyone at JGI is so nice and helpful.”     Mo Kaze, …
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Boosting Small Molecule Production in Super “Soup”
… to keep processes running smoothly. As reported August 26, 2021, in Nature Communications , researchers led by Hal Alper at The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Tanja Woyke
… assumed the Deputy Director of User Program position in 2021. In addition to her JGI appointment, she also holds an … Reviewer for major journals and funding agencies, including Nature, Nature Biotechnology, Nature Methods, Nature … chemoautotrophic symbiont genome. Science 315, 998-1000. Woyke et al. 2006. Symbiosis insights through …
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Hiroshi Otani
… of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and … bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. …
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Emiley Eloe-Fadrosh
Scripps Institution of Oceanography … Vyshenska D, et al. 2023. A standardized quantitative analysis strategy for … genomic catalogue of Earth’s microbiomes. Biotechnol . doi: 10.1038/s41587-020-0718-6. Wood-Charlson EM, et al. 2020. … pervasive in bacteria and archaea across Earth’s biomes. Nature Microbiol. 4: 1895-1906. Roux S, et al. 2019. Minimum …
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Fungal Friends or Foes in Plant Roots
… (Berkeley Lab). Their findings were described in a recent Nature Communications paper . The work was partly enabled by … toward filling gaps on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled … Office of Science of the U.S. DOE under Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: …
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Busting the Unbreakable Lignin
California at Santa Barbara  recently published a paper in  Nature Microbiology offering irrefutable evidence that … Research of the U.S. Department of Energy grant DE-SC0020420 (MAO), Institute for Collaborative Biotechnologies … (MAO), US Army Research Office contract W911NF-19-1-0010 (MAO), National Science Foundation grant MCB-1553721 …
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Understanding Wildfire Recovery, Starting in Soil
… of which microbes are present. This study, published in Nature Microbiology , went a step further, using both DNA … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful … … This work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed …
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