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Silver age of GOLD introduces new features
… them. GOLD provides manually curated metadata resources for organisms and environmental samples. The database aggregates … scheme to better define the genomic information and ecosystems. These curated data are accessible on JGI data … to ensure digital assets are findable, accessible, interoperable and reusable. Summary GOLD takes samples …
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An Automated Tool for Assessing Virus Data Quality
… and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled … virus sequences vary widely. In a previous effort, an international consortium recommended specific guidelines and … completeness and removal of contamination from the host organism. As reported in Nature Biotechnology , a team from …
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The emergence of microbiome centres
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Mapping the microbiome milieu
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… learns to recognize patterns, structures and relationships within the data — similar to the way LLMs learn grammar and … efforts to build predictive models for the behaviors and interactions of complex systems.  One of its key innovations … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Hao Chen, Jay Chen, Maureen Coleman and Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito … innovation through genomic discovery across diverse organisms and ecosystems. Scientists are engineering next-generation …
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Taking Stock of the Known and Unknown Microbial Space
… Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out … cycles. The information gained from understanding the interactions between microbes, hosts, and their environments … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to …
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Conversion of Amazon rainforest to agriculture alters community traits of methane‐cycling organisms
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Microscopic Algae as New Emerging Models for Studies of Organic Biocrystallization and Vision
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Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow
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Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
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Complete Genome Sequence of Nitrosospira multiformis, an Ammonia-Oxidizing Bacterium from the Soil Environment▿ †
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