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Extracting the Secrets of Secondary Metabolites
… and CRAGE technologies. While CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is the leading tool … of robust tools available for carrying CRISPR into microorganisms. CRAGE (Chassis-independent Recombinase-Assisted … to identify strains able to produce secondary metabolites within a lab environment, shining a light into this …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On … current, and only, version of Phytozome accessible as an interactive website. Since May 2019, v12 has not had any … that most bookmarked v12 links (e.g., to gene reports and organism information pages) will be seamlessly forwarded to …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… student summer research experience at the JGI, the Genomics Internship Program expanded to include UC Merced … a project scientist in Visel’s Genomics of Plant-Microbial Interactions Group who has mentored several of the students …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… offered the researchers insights into how they might interact with their hosts, and how those interactions may in turn impact the host communities and … biogeographic distribution of these viruses in the various ecosystems, their diversity, their predicted metabolic …
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Yasuo Yoshikuni
… developing genome engineering tools for non-model organisms, modulating microbe-microbe and plant-microbe interactions in various environments to improve crop yield, … corners. Nature Review Microbiology , 2022 DeMirci et al. Intersubunit Coupling Enables Fast CO2-Fixation by Reductive …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… here . Bruce Hungate, Northern Arizona University Interrogating the microscopic communities at work around the … “We need those lab studies to really understand what the organisms can do. And we need the field’s context to see why … and what factors determine how a particular virus evolves within a particular ecosystem. There is a wide range of …
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Single Cell Research Group
… methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells … as based on a specific functional trait or phenotype of interest, prior to and in conjunction with whole genome … Kyrpides N. C., Woyke T . Giant virus diversity and host interactions through global metagenomics.” Nature 578(7795): …
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Mapping the Earth’s Hidden Fungal Kingdom
… From the deepest ocean floors to Antarctic valleys, these organisms have diversified into an estimated 2–6 million … reveals a stark imbalance. More recently evolved fungi within Dikarya, which include familiar mushrooms and yeasts, … by hypotheses about fungal lifestyle and their roles in ecosystems.” The JGI's comprehensive genomic infrastructure, …
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Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions
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Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long‐standing interaction among land plants and fungi
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Partnerships: Adopt-A-Genome
… data and tools for comparative analysis, visualization and interpretation using public datasets.  … IMG/M provides data and tools via a graphical user interface, so no programming knowledge and no dedicated … is required to perform computational analysis. IMG/M user interface is designed for use by microbiologists to quickly …
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Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course “Evolutionary and Comparative Genomics”
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