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Waiting to Respire
… applied by a common ancestor to all five lineages. In the lab of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and research …
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Better Living Through Bioenergy
… research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy …
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Environmental Genomics Group
Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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Boosting Small Molecule Production in Super “Soup”
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory, indicates metabolic pathways could be more … paper is the first result of the collaboration with the JGI, where they are partnering with Yasuo Yoshikuni and Ian …
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Marine Microbe Contains Multitudes
… can carry out. The work on single cells was done in collaboration with scientists Tanja Woyke and Rex Malmstrom at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory (Berkeley Lab), through the JGI Community Science Program . The metagenomes were also …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a … the cover of ACS Synthetic Biology. (Wayne Keefe/Berkeley Lab) For example, the JGI first used CRAGE to engineer … deletions in four gammaproteobacterial species, and then removing the editing machinery afterward seamlessly. These …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), embarked on a pilot project with …
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Complete Genome Sequence of the Metabolically Versatile Plant Growth-Promoting Endophyte Variovorax paradoxus S110
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the journal … Associate Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from the lab to the classroom. …
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Draft Genome Sequence of Mn(II)-Oxidizing Bacterium Oxalobacteraceae sp. Strain AB_14
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — Summit and Frontier — … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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David Goodstein
… equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to … expert curation of human gene models in support of JGI’s contributions to the Human Genome Project, he began … analysis and data distribution for the JGI's direct collaborators and the wider plant science community. Dr. …
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