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Biotech Partners Summer Intern Co-Authors NAR Paper
… the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s … metadata tasks we assigned.”       Click here to watch a video about the Biotech Partner summer interns at the JGI. What did you do for your summer vacation? …
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … to recover the genomes of these viruses and associate them with their microbial hosts. However, assembling viral …
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Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
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Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
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Finding the Fermenters
… and comprehensive database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with little or no oxygen, life had found other ways to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the RNA virome However, this is now real Big Data, we are dealing with billions of sequences, and soon, with … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … genetic material, thus bypassing the need to culture these microbes in the lab. After joining the JGI, he formed the … in situ functional activities of specific microbial groups within complex communities.  The Microscale Applications …
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CalTeach
… theory and promoting diversity, equity, and inclusion, with concurrent field work in local classrooms and tutoring centers. Cal Teach offers a minor in Science and Math Education, as well as a unique opportunity to complete a California K-12 science or math teaching credential as an undergraduate …
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Trent Northen
… Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the development …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s … and have very little oxygen, which is tough on the type of microbes that break down plant matter. This means plants don’t fully decompose in peatlands, and so carbon within their tissues doesn’t return to the atmosphere. Peat …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for the global research … .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and stimulate a …
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The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections
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