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… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run on supercomputing hardware and worked …

… Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how … to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …

… Nayfach S, et al. (2021) A genomic catalog of Earth’s microbiomes. Nature Biotechnol . 39(4):499-509 Danko … . 39:578-585 Nayfach S. et al. 2021. A genomic catalog of Earth’s microbiomes. Nature Biotechnol . 39:499-509. … inoviruses are pervasive in bacteria and archaea across Earth’s biomes. Nature 4:1895-1906 Sberro H. et al. 2019 …

… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of … analysis to better characterize how viruses infect soil microbes and influence how soil ecosystems function. He was …

… light, and opening up new options for engineering these microbes in the future. Join Sarah Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their recent work on a time series …

… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite … art of hands-on microbiology and experimental validation.  Microbes run the world, playing key roles in regulating …

… The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their …

… The JGI Project Management Office carries out a number of … to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and …

… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida … to present the results of their efforts during the Energy, Earth and Environmental Education (E4) community-building …

… to commandeer. For bacteriophage viruses, these hosts are microbes like bacteria, not humans. With metagenomic … Within the domains of archaea and bacteria, millions of  microbes govern ecosystems. These organisms carry out … viruses are constantly infecting and reprogramming these microbes. A better understanding of virus-host interactions …

… microbial communities. These experiments can show which microbes are handling specific nutrients, or what they're … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … multiple teams and analyses. This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few …

… of User Program position in 2021. In addition to her JGI appointment, she also holds an Adjunct Scientist … provides direction, leadership and oversight for all of the JGI user programs, including the Community Science Program … 20: 721 Nayfach et al. 2021. A genomic catalog of Earth’s microbiomes. Nature Biotechnology 39, 499-509. …