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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced … Program. Conceived by Wang and Visel, the program challenges UC Merced graduate students with individual … with postdoctoral fellow Ben Cole on a project involving bacteria in Arabidopsis plant roots. At the same time, …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the … still, there are no boundaries in the ocean. Yet, what was found here is that there is this invisible partitioning of … that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is the largest …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome … to solve the world’s evolving energy and environmental challenges.   Mission  The mission of the JGI is to provide …
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Accelerating Metagenomics Discoveries with Deep Learning
Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 … of these algorithms, inspired by communication networks found in nature, allows machines to “learn” features. State … that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is the largest …
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Biology of Fungi and Their Bacterial Endosymbionts
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Aerobic bacterial methane synthesis
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have … great science that will help solve energy and environmental challenges. Oh, the magical world of the cow stomach. Rumen … energy production.  However, less than 10% of the microbes found in any environment can be grown in a laboratory — and …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to … the largest class of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes Project, including …
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Extracting the Secrets of Secondary Metabolites
… for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired … in response to hardship or competition. They make up the foundation for a slew of vital products in biotechnology, … pest control. Secondary metabolites are highly regulated in bacteria, making it difficult to identify which pathway …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is … to stay localized at different depths. But SAR324 can be found throughout the water column, from the warm, well-lit …
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Genomic features of bacterial adaptation to plants
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Cultivating the Bacterial Microbiota of Populus Roots
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