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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? … which is a really exciting jump in the rate of product formation.” This was the first time CRISPR-Cas9 had been … Rapid Prototyping of Genes and Pathways” at the JGI Annual Genomics of Energy & Environment Meeting on September 1, …
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Effects of Polar Light Cycle on Microbial Food Web
… change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the norm when it comes to … there is a strong chemical and salinity gradient — and green sulfur bacteria,  Chlorobium , blooms. The specific … 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
… To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone Health) and Leslie Mitchell …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a … working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging … Handling Editor, Journal Experimental Botany, 2022 – present …
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A Plant Root Atlas for Tracking Developmental Trajectories
… nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … with the JGI’s growing efforts in establishing plant and fungal single-cell and spatial transcriptomic technologies, … developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be available for …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a … with GENESPACE, a computational tool for comparative genomics.   With a more robust reference genome, researchers have unlocked new information on the structural diversity of eucalyptus. The …
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Introducing New Members of the JGI User Executive Committee
… “you-wren”) of the University of Arizona! They join nine other JGI users already serving on the UEC – go here … cellular phenotypes and genotypes. Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would … review procedures and the organization of the JGI Annual Genomics of Energy & Meeting. Any investigator who has been …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … it’s a little hard to find in print, but we live in the information age and the ebook version is available at most … of biology. You know, I’ve personally been able to work in genomics, in protein structure, in synthetic biology, …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On … bookmarked v12 links (e.g., to gene reports and organism information pages) will be seamlessly forwarded to Phytozome … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” … individual genome highlighting the fact that the genetic information in a single reference genome is insufficient. “We … said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author on the …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging … has released its newest 5-Year Strategic Plan: Innovating Genomics to Serve the Changing Planet (download a copy at … advance biotechnology and biomanufacturing.  As a leader in genomics for bioenergy and environmental solutions, the JGI …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually … the goal of inspiring students to embark on a career in genomics and to help foster a diverse future workforce in … Blurring the Line Between Plasmids and Phages … Evolution of the Mitochondria Internship …
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