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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from … capabilities, large-scale data, and professional expertise to support the global research community in studies of … and environmental systems. We optimize our service to the community through responsibly managing our people and …
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to their User Executive Committee (UEC) – Jack Gilbert, … six other JGI users already serving on the UEC – go here to view the full roster of members. Each of the researchers … collaborators and other scientific organizations. Fungal biologist Stajich from UC Riverside sees the JGI’s …
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Triggering Morel Fruiting
… an external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In … system which allows the black morel to complete its lifecycle in an artificial environment. It is particularly …
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Busting the Unbreakable Lignin
… components   The Science There are three main ingredients to tackle when it comes to breaking down a plant for energy: Cellulose, … conducted RNA sequencing and alignment to the reference fungal  genome . The study’s pivotal NMR (nuclear magnetic … DE-AC02–05CH11231 (Lawrence Berkeley National Laboratory), and the Office of Biological and Environmental …
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Cultivating Symbiotic Antarctic Microbes
… employed multiple microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are … play critical roles in environmental processes (related to interactions of soil-sediment environments, water and … the humans and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … complex genome whose evolutionary history and perennial lifecycle makes it important to study directly. The large and …
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Leo Baumgart
… the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and microfluidics at the … operationalizing new genomic technologies, integrating automated liquid handling and bioinformatics pipelines to transition bench-scale methods into production workflows. …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… evokes images of fanboats skimming over swamps, while alligators peer through the waters and clouds of insects hover … encompass a wide range of ecosystems ranging from wetlands to tree islands to cattails. In 2018, the US Department of … about the microbes that play roles in the methane cycle. Their data report, which provides the only known …
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Pinning Down a Piece of Photosynthesis
… a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon in changing conditions. The products of … User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds … and viral BGC sequences. Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently …
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to the JGI User Executive Committee (UEC) : Roland … cellular phenotypes and genotypes. Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would … ecological and evolutionary factors shaping the assembly of fungal endophytes across land plants and lichens, mentioned …
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the JGI! They are … production of multiple highly-cited papers that rank in the top 1% by citations for field and year in the Web of … consortium, they  conducted a large-scale comparison of 135 fungal sequenced genomes to understand how plants and fungi …
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