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… based on open ocean samples. CheckV identified a total of 44,652 complete or near-complete viral genomes across both … fragments. Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of … Foundation (FAPESP). A.P.C. received a scholarship #2018/04240-0 from FAPESP. … CheckV on IMG/M Data portal … …

Baldrian’s team was investigating. So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) … referencing the database, Baldrian’s team was able to identify enzymes in the soil and who made them. Based on data … Integrating Collaborations for User Science (FICUS; #49499) program and used resources at the DOE Joint Genome …

Germany. The BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, … ( IMG/M ) portal. As part of a comparative analysis, 824 new GEBA-Actino genome sequences were combined with nearly …

… biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant … to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better …

A, Chu K, Ritter SJ, Reddy TBK, Mukherjee S et al. IMG/VR v4: an expanded database of uncultured virus genomes within a … annotations and metadata. Nucleic acids research Jan 2024 Chen IA, Markowitz V, Szeto E, Palaniappan K, and Chu K. … Data Analysis System in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …

… they sequenced DNA ‘marker’ gene sequences to identify the microbes. And in order to determine what genes the … an average surface temperature of about 58° Fahrenheit (14° Celsius) — a cool intermediate to the ocean’s extremes of … 5th Assessment Report to predict where and how fast the 14° Celsius boundary is moving. “It’s driven by climate: warm …

… in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and … conducted some microscopy studies over the next couple of years, and realized it was a sulfur-oxidizing prokaryote. … the study, performed the 16S rRNA gene sequencing to identify and classify the prokaryote. “I thought they were …