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An Automated Tool for Assessing Virus Data Quality
… suite, as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. CheckV identified a … fragments. Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of … Foundation (FAPESP). A.P.C. received a scholarship #2018/04240-0 from FAPESP. … CheckV on IMG/M Data portal … …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Baldrian’s team was investigating. So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) … referencing the database, Baldrian’s team was able to identify enzymes in the soil and who made them. Based on data … work was supported by the Czech Science Foundation (18- 25706S and 20-02022Y), by the Ministry of Education, Youth …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … Germany. The BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant … to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better …
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I-Min (Amy) Chen
Genomes (IMG) family of systems. Before joining LBNL in 2006, she was Director of Application Development Systems at Gene Logic, Inc. from 1997 to 2005, responsible for the development of key components of … updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, Palaniappan K, Ratner …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… are.” But according to a new study published September 16, 2021 in Nature Communications , warmer waters and communities … they sequenced DNA ‘marker’ gene sequences to identify the microbes. And in order to determine what genes the …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and … conducted some microscopy studies over the next couple of years, and realized it was a sulfur-oxidizing prokaryote. … the study, performed the 16S rRNA gene sequencing to identify and classify the prokaryote. “I thought they were …
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