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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with double-stranded DNA genomes that co-infect …
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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Teredinibacter haidensis sp. nov., Teredinibacter purpureus sp. nov. and Teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc Bankia setacea (Bivalvia: Teredinidae) and emended
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The CC–NB–LRR protein BSR1 from Brachypodium confers resistance to Barley stripe mosaic virus in gramineous plants by recognising TGB1 movement protein
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Understanding Wildfire Recovery, Starting in Soil
… forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the … can transplant trees and soils, targeting helpful bacteria, viruses and fungi. Overall, better understanding of a … identify those traits that have helped fungi, bacteria and viruses survive. With this metagenomic analysis, it was …
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Waiting to Respire
… analyzed single amplified genomes of Margulisbacteria from marine samples. The research teams opted to collaborate on a …
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JGI on the 2021 Highly Cited Researchers List
… colleagues used an extensive JGI database to investigate viruses detected in the samples. Simon Roux co-organized the … on how to best capture and characterize uncultivated viruses, understand the role of viruses in natural ecosystems, and functionally explore …
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Virus-Microbe Interactions of Mud Island Mangroves
… I wanted to incorporate that CSP, but also look at how viruses might be influencing the methane cycling within … wetlands.” A chapter of Rambo’s research focuses on how viruses influence carbon cycling in coastal mangroves. His …
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Natural Prodcast Episode 2: The Primer, Part 2
… I mean, from the Salem witch trials, we have definitely learned a valuable historical lesson. Know your secondary …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of …
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Nikos Kyrpides
… S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Nature . 578:432-436 Roux S. et al. 2019. Cryptic inoviruses are pervasive in bacteria and archaea across Earth’s … ( MetaHIT ); Community Cyber-infrastructure for Advanced Marine Microbial Ecology Research and Analysis ( CAMERA ). …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… However, no microbe works alone. Archaea, bacteria, and viruses all operate in concert to form the foundation of this deep Earth ecosystem. For example, when certain viruses attack, their archaeal hosts release organic carbon. … that CRISPR-Cas systems target infectious agents like viruses and plasmids. First,  Ca . Altiarchaeum had …
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