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Trent Northen
… in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass spectrometry for … Populus across genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  … serves as the Deputy Director of the Environmental Genomics and Systems Biology at Lawrence Berkeley National …
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Accelerating Metagenomics Discoveries with Deep Learning
… an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered … a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … by our new switchgrass manuscript , we plan to use existing data as well as generating additional genomic resources to …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have … in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists to … that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! … and the JGI. Building off this work, researchers at three DOE Bioenergy Research Centers (BRCs) have expanded the …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have … pathogen and trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US … large-scale “citizen science” project to generate real-time data for modeling and predicting the spread of a plant …
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Tanja Woyke Elected to American Academy of Microbiology
Congratulations to the JGI’s Tanja Woyke , who has been … Laboratory (Berkeley Lab), Woyke has led JGI’s Microbial Genomics Program since 2009 and heads the Single Cells … Symposium which is being held in conjunction with the DOE Joint Genome Institute’s 15th Annual Genomics of Energy …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… the aim of intensifying collaborations in the fields of genomics, structural biology, bioimaging, and water … the Research Center One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and … biology, single cell and systems biology, omics, and big data science, machine learning for experimental science, …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes … A team led by researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … find genetic regions of interest.” The combination of field data and genetic information has allowed the research team … sites. “This paper is a combination of really cutting-edge genomics and genetic analysis with large scale data …
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … felling their research problem: at a genetic level, how does  Y. lipolytica work? The project was a … U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica is a …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … Phaseolus as a test model quite frequently for R&D in plant genomics, because it is an inbred dicot,” Schmutz explained, … classes of beans.” … P. vulgaris on Phytozome … Plant Datasets …
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