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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of … perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis … The reference genome for M. sinensis, and the associated genomic tools, allows Miscanthus to both inform and benefit …
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JGI@25: Using Team Science to Build Communities Around Data
… for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … The project’s aim is to generate high-quality genome assemblies and annotations for 35 species representing all … way to connect genes and infer changes in gene function across the phylogeny — and link these into our DOE …
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JGI Announces 2023 Community Science Program Awardees
… Congratulations to the proposers of the 19 proposals … success. “ The CSP Annual Call is focused on large-scale genomic science projects relevant to the DOE’s Office of … year’s annual CSP call had five areas of emphasis: genes to function, plant and algal functional genomics, …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… other countries for essential oil production. The recent assembly of two Corymbia citriodora subspecies variegata … desirable from a biofuels production perspective. By using genomic database alignment tools, researchers searched for … Heredity . In order to understand the gene expression and function of these TPS genes, Australian researchers …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive … project . They also used the tool to predict possible functions from 733 metagenome-assembled rumen genomes. Finally, they used the tool to … work was supported by the United States Department of Agriculture National Institute of Food and Agriculture grant …
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Uncovering Novel Genomes from Earth’s Microbiomes
… and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … we were able to reconstruct thousands of metagenome-assembled genomes (MAGs) directly from sequenced environmental … and it gives us new insights into microbial diversity and function.” He is already finding ways to utilize the catalog …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a … Brachypodium distachyon is a small annual grass that is well suited to experimental manipulation in the laboratory because of its compact genome, diploid nature, self …
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Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry
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Conservation of linkage and evolution of developmental function within the Tbx2/3/4/5 subfamily of T-box genes: implications for the origin of vertebrate limbs
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Functional Characterization of Two Class II Diterpene Synthases Indicates Additional Specialized Diterpenoid Pathways in Maize (Zea mays)
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Association of functionally significant Melanocortin-4 but not Melanocortin-3 receptor mutations with severe adult obesity in a large North American case–control study
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