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Mateus Fiamenghi
… and analysis of Mobile Genetic Elements from Metagenomic Data.  Mateus’s GitHub …
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Antonio Camargo
… classification of Mobile Genetic Elements from metagenomic data.  Antonio's GitHub …
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Triggering Morel Fruiting
… because they influence geochemical cycling in forest ecosystems. By deciphering the fruiting-related decomposition … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  … . … Morel Mushrooms on MycoCosm Data Portal …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … and … that was really the foundation for many of the tools that are available these days and that are widely used … actually tested in the 2011 paper. In 2015, the study’s dataset became material for a hands-on undergraduate …
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A Natural Mechanism Can Turbocharge Viral Evolution
… has looked for DGRs in a broad range of publicly available datasets. They’ve discovered that DGRs are not only … level. Scientists might then harness them as molecular tools for research and industry applications. Summary In … and through a Challenge Grant from the California NanoSystems Institute at the University of California Santa …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two … hair. At such resolution, this spatial transcriptomics data captured molecular information from both plant cells … grasses, like sorghum and switchgrass. We’re optimizing systems now, so that we can get those working,” Cole said.  …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Pinning Down a Piece of Photosynthesis
… or DRI for short.  A kaleidoscope of structure-function data To study DRI experimentally, Blaby-Haas, Grosjean and … Scientists at Stanford’s SSRL were able to provide crucial data supporting the presence of the zinc-mirror heme site — … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Len Pennacchio
… the JGI’s primary point of contact for all High-Throughput Data Generation Platforms (Sequencing, Single Cell, DNA … of Human Genomics, Sanger Center 2011-  Co-Organizer “Systems Biology of Gene Regulation and Genome Editing,” Cold …
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Krishna Palaniappan
… and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and metagenomic data with transcriptomics and proteomics data. …
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10 From JGI on the 2019 Highly Cited Researchers List
Lead Dan Rokhsar, Molecular Biology & Genetics Staff Data Scientist Asaf Salamov, Plant & Animal Science category … and Molecular Biology & Genetics categories Microbial Systems research group lead and User Programs Deputy … to develop guidelines and best practices for defining virus data quality. Reported in Nature Biotechnology, the work …
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The More the Merrier: Making the Case for Plant Pan-genomes
… quality genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  … . … Brachypodium distachyon on Phytozome Data Portal …
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