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DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area …

… ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted … predictor of gene expression levels using machine learning tools. “This was very exciting to see how Rhondene not only … the research question and applied it to such a large data set, but also went all the way through to convert her …

Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … to support a forest, and species vary across Earth’s ecosystems.  Recently, in work  published in  New Phytologist , … RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. …

… a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a … co-infecting phages and with the host’s CRISPR-Cas immunity systems. Countering Co-Infections, Ensuring Host Survival … of phage-bacterial coevolution and are also useful tools in CRISPR-Cas applications, but we are limited in our …

… because they influence geochemical cycling in forest ecosystems. By deciphering the fruiting-related decomposition … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  … . … Morel Mushrooms on MycoCosm Data Portal …

… and analysis of Mobile Genetic Elements from Metagenomic Data.  Mateus’s GitHub …

… that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … and … that was really the foundation for many of the tools that are available these days and that are widely used … actually tested in the 2011 paper. In 2015, the study’s dataset became material for a hands-on undergraduate …

… quality genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  … . … Brachypodium distachyon on Phytozome Data Portal …

… classification of Mobile Genetic Elements from metagenomic data.  Antonio's GitHub …

… has looked for DGRs in a broad range of publicly available datasets. They’ve discovered that DGRs are not only … level. Scientists might then harness them as molecular tools for research and industry applications. Summary In … and through a Challenge Grant from the California NanoSystems Institute at the University of California Santa …