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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… blueprint has long been a significant challenge in genomics. Enter GenomeOcean, a powerful generative model  now … existing methodologies developed for natural languages to study genomes,” Wang explained.  And since microbial genomes … demand for substantial operational resources.  ”The metagenomics data generated by the JGI are very high-quality,” Wang …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… These days, Session is starting his lab at Binghamton “studying polyploids and transposon evolution, expanding on … in more species, as well as modifying this method to study other types of problems surrounding differential …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… and replicating with their host indefinitely. Now, in studying a microbial mat from Cone Pool in Mono County, … on culturing virus and host pairs in the laboratory to study their interactions. This work,  recently published in  … virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the 34 …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated … and how sequencing and bioinformatics have sped up the study of giant viruses. The Impact In their existence as …
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Open Frameworks Training the Next Generation of Scientists
… education that develops skills in fungal biology and genomics.  Myco-Ed :  The Mycological Curriculum for Education … 316 students in fungal biology, bioinformatics, and genomics.  The Impact For decades, the Department of Energy … genomes, but unfortunately there are not many available to study. This is because most fungal clades have no reference …
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JGI User Executive Committee Expands
… Along with the existing UEC members, their areas of study span the research interests of the JGI’s user … genetics expertise and experience as a primarily fungal genomics user, he aims to help align JGI policies with broader …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… their expertise in developing and managing public viral genomics resources such as analytical tools and data … and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The Program aims to … categories: Catalog the human virome; Develop tools to study the human virome; Explore how the human virome …
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Mining Metagenomes for Cas Proteins
… characterized at UC Berkeley and the Innovative Genomics Institute.  The Science Researchers report the … Berkeley, which is also affiliated with the Innovative Genomics Institute. The Impact The ability to accurately edit … author Lucas Harrington was a graduate student from study senior author Jennifer Doudna’s lab, and he worked …
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JGI@25: The Little Alga That Could
… (affectionately known as “Chlamy” to those who study it) a powerful reference organism for studying photosynthesis and cell motility. It’s also a model … Marina Cvetkovska of the University of Ottawa on the multi-omics of arctic-growing Chlamy. Merchant continues to work …
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Enlarging Windows into Understanding Gene Functions
… Lab). And one of the tools that researchers can apply to study the transcription factors that control how genes are … be used by itself, it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the … cannot be cultivated in the lab. What makes this particular study unique is the application of single cell genomics to a …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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