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SPRUCE-ing Up Science
… researcher at the Oak Ridge National Laboratory (ORNL), based in Oak Ridge, Tennessee. Recently, Lawrence, in … fundamentally meaningful given its relevance to the global climate change crisis. And, it’s an opportunity to contribute to the …
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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant metabolic changes in marine microbes, the answer is no. They refer to … cells as virocells, a change in name first described in 2011 which reflects the metabolic changes they’ve undergone. …
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Waiting to Respire
Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More … cyanobacteria acquired the ability to produce their own food and generate oxygen as a byproduct. The abundance of … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. Summary A … toward filling gaps on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled …
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Data Ecosystem
… cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … optimized for high-performance computing environments. … KBase is a critical partner in enabling systems biology … go well beyond genome annotation and analysis. The JGI and KBase seek to enable users to seamlessly access and analyze …
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New Research Sheds Light on Diversity in the Deep Sea
… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … five oceanic regions. In doing so, they found a high degree of variability in the types of microorganisms that inhabit … function in such extreme conditions. They identified 511 new or recently discovered genera of bacteria and …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … ecologist with interests in understanding which processes change biodiversity, and how these changes affect the … on dead wood decomposition. She’s also participated in the 1000 Fungal Genomes Project and has an interest in …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a … and Jason Stajich from UC Riverside would focus on broad sampling of early diverging fungi, and Francis Martin of the … a more straightforward way to connect genes and infer changes in gene function across the phylogeny — and link …
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Jeremy Schmutz
… with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford Human Genome … human chromosomes 5, 16, and 19. Following the completion of the human genome project in 2003, he developed … . 51, 1–24.Lovell, JT et al. 2021. Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and … the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint …
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