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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most … shotgun metagenomic sequencing and single-cell sequencing. For years, extracting single cells and then amplifying their DNA for genome sequencing was no easy task. The traditional way …
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JGI@25: Solving the Mystery of the Missing Oil
Lab) were on the scene collecting samples. Terry Hazen, a former Berkeley Lab environmental biologist and current … Janet Jansson’s team. Jansson is currently Chief Scientist for Biology in the Biological Sciences Division and a … different fractions of the oil. Hazen described the early efforts in his keynote talk at JGI’s 2011 Annual Genomics of …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
PI on this project. “I view the program as an excellent platform to build collaborative research initiatives.” Yasuo … — and their applications — are evolving. “JGI is famous for its work sequencing human and environmental genomes. But … as a biochemical factory.  “These large-scale research efforts are accelerating the transition into real-world …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… living on a changing planet. Mo Kaze is a University of California (UC), Merced graduate student working with  Susannah … Community Structure and Methane Production in California’s Canal System,” focuses on anthropogenic impacts on … on which she is expanding with her study of microbes in California’s manmade water transport canals. Inspired by Randall …
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Nick Everson
… the DOE Joint Bioenergy Institute and the Operations Deputy for LBNL’s Biological Systems & Engineering Division. Prior … to his tenure with Berkeley Lab, he served in the US Navy for 6 years as a submarine electrician and a financial … health and safety, and business issues. … Selected for the 2012 LBNL “Emerging Leader Program” at the UC …
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Dispatches From JGI Interns
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Boosting Small Molecule Production in Super “Soup”
… to make products such as proteins, and the mechanisms for maintenance to keep processes running smoothly. As … structure into a cell-free system. The work complements efforts to further develop sustainable alternative approaches for manufacturing bioproducts and biofuels . This first …
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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow … She also develops novel flow cytometry protocols for targeted recovery of specific microbes. …
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Axel Visel
… the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and … in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in … novel computational and experimental sequence-based methods for elucidating the gene regulatory landscape of vertebrate …
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Micro-Scale Applications Group
… of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI … that allow us to select specific uncultivated microbes for sequencing based on their level of metabolic activity … … Stable isotope probing metagenomics: … Single cell: … For further details, please reach out to the Group Lead …
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A Grass Model to Help Improve Giant Miscanthus
The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … year (perenniality). The Impact Among the long-term aims for bioenergy feedstock crops are increasing their yields … such as poor soils and drought. The reference genome for M. sinensis, and the associated genomic tools, allows …
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A Plantiful Future: Xiaohan Yang
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