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Trent Northen
… leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental … Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and … products. Proceedings of the National Academy of Sciences. 2021 May 4;118(18). https://doi.org/10.1073/pnas.2019855118 …
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JGI@25: Building a Better Bean
… may not seem to amount to much, the common bean (Phaseolus vulgaris) is actually a vital source of protein in many … works on food crops specifically, “[At the JGI] we do use Phaseolus as a test model quite frequently for R&D in … trait. Traditionally beans have had a shelf-life about roughly 6-9 months before their color begins to …
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Green Algae Reveal One mRNA Encodes Many Proteins
… messenger RNA, which encodes a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples of polycistronic expression – in which two or … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab and the Environmental …
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Better Genome Editing for Bioenergy
… of the genes in a lipid-prolific yeast. The Impact The team used this set of guide RNAs on  Yarrowia lipolytica to … furthers the U.S. Department of Energy’s goal of producing sustainable fuels from alternative sources. Moreover, the team says the approach they used to validate their set of guide RNAs could be applied to …
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Introducing New Members of the JGI User Executive Committee
The JGI welcomes three new members to their User Executive Committee (UEC) – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here to view the full … community outreach efforts with diversity, equity and inclusion in mind. Microbiome ecologist Shade became Director of …
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JGI@25: Solving the Mystery of the Missing Oil
… between.” To find an explanation, his team tracked the thousands of bacterial and archaeal species using a DNA-based array developed at Berkeley Lab. Over the …
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A One-Stop Shop for Analyzing Algal Genomes
… an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, … genetic underpinnings responsible for these traits takes us closer to harnessing algae for bioenergy and the greater … genomic data on algae into one place, PhycoCosm allows users to easily compile data that answers what genes are …
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Hiroshi Otani
… particularly actinomycetes. His research activity is focused on developing and implementing new technologies and … Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. Otani H, … trove of microbial natural products. Nat Rev Microbiol. 2021 Nov;19(11):683. Mouncey NJ, Otani H, Udwary D, …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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The More the Merrier: Making the Case for Plant Pan-genomes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and in the laboratory. “We are fortunate because the progenitor species of  Brachypodium hybridum are … de Zaragoza, one of the paper’s senior authors. “It offers us the possibility to explore genomically the whole complex …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a host, and not just any host will do. It must be a …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… novel technique to access high-quality genomic information using minute quantities of DNA derived from individual … Other firsts followed. The next year, the JGI team reported the first closed and finished genome derived from … microbial genomes that were mapped to nearly 30 major previously uncharted branches of the tree of life. Used in tandem …
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