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Broad‐specificity GH131 β‐glucanases are a hallmark of fungi and oomycetes that colonize plants
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Complete genome sequence of Saccharomonospora viridis type strain (P101T)
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Unique Capability DAP-seq allows researchers to identify all the sites where transcription factors bind quickly … as tough as it has been 10 years ago,” he said. “We thought about reconstructing gene regulatory networks, understanding …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… work into a written report that is published in a scientific journal is the ultimate achievement. To get to this point requires rigorous research, written skill, above all else, determination. … Grigoriev at the JGI strongly influenced her perspective about what it means to be a scientist. “To see how team …
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it … ocean could fix less carbon when infected. Little is known about virus-infected microbial cells that are transformed … authors, while the study’s lead author is Cristina Howard-Varona, a postdoctoral researcher in Sullivan’s …
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JGI Hosts GPU Hackathon in May
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore applications in the life … to keep pace with changes in industry/DOE Advanced Scientific Computing Research (ASCR) facilities. It’s a … to the Team Proposal tab to submit. For more information about the 2019 GPU Hackathons, go to:  …
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Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression
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Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood
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Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing
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Gene Expression: From On-Off Switch to Dial
Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science Scientists have … approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of … the realm of bioenergy optimization. Summary Life is all about balance. This study,  recently published in the  …
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Access to Rock Star Scientists
Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The students’ research … so nice and helpful.”     Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and really open to talking about their work. It’s fun to be around people who are …
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Streamlining Regulon Identification in Bacteria
… demonstrated the efficacy and potential of regulon identification by in vitro transcription-sequencing (RIViT-seq) … sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … efficacy of RIViT-seq, researchers recently characterized 12 sigma factors and were able to identify the associated …
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