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The Case for Conservation
… crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, … pathways could lead to the discovery of genes that could be used for multiple biotechnological applications. These … HudsonAlpha. As the team discussed in a JGI podcast episode about the work, the effort to fully sequence the fire moss …
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When “The Blob” Made It Hotter Under the Water
… began in late 2013, when a large patch of warm ocean water about a third the size of the United States began forming in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … through the Community Science Program . The proposal focuses on uncovering the metabolic networks involved in carbon …
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Fungal Friends or Foes in Plant Roots
… fungi can form such symbiotic partnerships. To learn more about these other plant-fungal relationships, an … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … The team then compared this dataset against nearly 80 previously published fungal genomes on the JGI data portal …
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JGI@25: Strengthening Soybean
… the JGI has also helped researchers understand a fungus that threatens these crops as they grow. Asian Soybean Rust is a major problem. Leaves grow discolored and rust … ASR can decimate up to 60-90% of its yield.  (Learn more about the soybean genome sequence and ASR in this JGIota, a …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … a cold-adapted microalga: the diatom Fragilariopsis cylindrus . At that time, they noted that the F. cylindrus genome encoded more proteins requiring zinc than …
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Atypical Divergence of SARS-CoV-2 Orf8 from Orf7a within the Coronavirus Lineage Suggests Potential Stealthy Viral Strategies in Immune Evasion
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant … ecosystems. A team of researchers described how the viruses repeatedly attempted to infect and destroy the host … Berkeley National Laboratory (Berkeley Lab). To learn more about how microbial populations respond to virus infections, …
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Daniel Udwary
Secondary Metabolites group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in bacteria and fungi. Prior to joining the JGI, he … "Natural Prodcast" podcast, a "fireside chat"-style podcast about natural products and the science and scientists of …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy … hold clues to how humans could do the same on an industrial scale to produce biofuels . Since one of the … expanded into three other universities. You can learn more about how JGI data supports higher education in this JGIota …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… amount of biomass which could then be converted into sustainable biofuels . For its importance to the DOE mission, … productivity across 1,100 miles and eight states. In 2021, using switchgrass samples from these gardens, a team led by … At the 2021 JGI Annual Meeting, David Lowry talked about a multi-year study his student conducted involving …
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Niche differentiation of bacteria and fungi in carbon and nitrogen cycling of different habitats in a temperate coniferous forest: A metaproteomic approach
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MycoCosm Tutorial
Learn more about MycoCosm, a data portal with over 2,000 fungal genomes …
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