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Characterizing Communities: JGI Announces Latest CSP Portfolio
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted … ecologically relevant species. Another focus area was inter-organismal interactions, and two fungal proposals focus on … the University of Minnesota is interested in learning more about the fungal endophytes of soybean and how they deter …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… snails, UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … Nuevo is, historically, a fishing town and we know little about its coastal microbial ecology. We also know little about where to collect the California Cone Snail  …
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Digging into Microbial Ecosystems Deep Underground
… in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important role in the cycling of … these systems.” -Mike Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins and his … Amundson at Colorado State University have many questions about the microbial communities deep underground, and before …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… reductase system, researchers could open avenues for using bacteria to produce ethylene and more.  Microbes excel … — other enzymatic machinery harvests sulfur from gaseous organic sulfur compounds in the atmosphere.  Beyond … contexts.  “That allows us now to really start thinking about the structure-function relationship. What could we do, …
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Extracting the Secrets of Secondary Metabolites
… combo helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those … of robust tools available for carrying CRISPR into microorganisms. CRAGE (Chassis-independent Recombinase-Assisted … and other industries — yet there’s still so much about them we don’t know.  Unlocking the power of secondary …
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JGI@25: Stories from Intern Alumni
… JGI has hosted interns from a number of universities and organizations. From field research and wet lab experiments, …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it … ocean could fix less carbon when infected. Little is known about virus-infected microbial cells that are transformed … viruses control them through infection, but little is known about the impacts of these infections on ecosystem …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public databases and … that carry them were strikingly different in both size and organization: Mitochondrial genome size and structure varied … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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JGI Hosts GPU Hackathon in May
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore applications in the life … or optimize their code on GPUs. While the  OLCF is organizing nearly a dozen hackathons around the world in … to the Team Proposal tab to submit. For more information about the 2019 GPU Hackathons, go to:  …
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Building Wet and Dry Lab Skills
… funded by a DOE training grant.  Building off the previous year’s project, undergraduate interns Tamyra Long and … the Oakland soccer club this summer.  Want to learn more about their experience? Watch the short video below:  Video … with Zyiah and Tamyra this summer and teaching them more about how to analyze data. Zyiah Mikes : Dr. Yi Zhai is our …
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Draft genome sequence of Trichococcus flocculiformis DSM 2094T isolated from bulking sludge in Germany.
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… be single bacterial cells, visible to the naked eye. The unusual size is notable because bacteria aren’t usually … newly discovered species of bacteria keeps its DNA more organized. “The big surprise of the project was to realize … explained. “This kind of discovery opens new questions about bacterial morphotypes that have never been studied …
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