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… One example, published in Nature , applied single-cell sequencing to decode genomes of bacteria and archaea from …

… algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal … inquiry: it shows a full phylogenetic tree of more than 100 sequenced algal genomes — many sequenced by the JGI — so researchers can easily explore the …

… Serpula species, S. himantioides from Europe, that was sequenced and analyzed by the JGI. The researchers found …

… and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …

… usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, extracting single cells and then amplifying their DNA for genome sequencing was no easy task. The traditional way of …

… conditions and a specific microbial host to replicate. Sequencing genetic material directly from samples sidesteps …

… RIViT-seq technology could speed up associating transcription … of regulon identification by in vitro transcription-sequencing (RIViT-seq) to facilitate the characterization of transcriptional …

… Ec YcgR, within the Nano-lantern scaffold. They then mined sequence databases for homologous YcgR proteins and chose a … These 92 homologues were synthesized as codon optimized sequences and cloned into the Nano-lantern scaffold. Because …

… but other important crops as well. In 2009, the JGI sequenced and analyzed the first reference genome for … JGI: 2009: JGI and collaborators use whole-genome shotgun sequencing to analyze the 730-megabase Sorghum bicolor (L.) … genome. Sorghum was the second cereal crop with a fully sequenced genome (following rice in 2002) and the first C4 …

… salt triggers this metabolic shift, the team combined RNA sequencing across multiple time points with Cappable-seq, a technique that precisely maps where transcription … The team also identified previously unknown promoter sequences within these gene clusters, offering new …

… (Berkeley Lab), has produced a high-quality reference sequence of the complex switchgrass  genome using samples … diversity within this set of plants, each with a fully-sequenced genome, and these gardens allow researchers to … by DOE’s Bioenergy Research Centers, which initiated the sequencing of the switchgrass genome. DOE’s  Billion Ton …

… value to the other commonly used culture-independent sequencing approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of the community was similar across sequencing approaches, that species specific sets of single …