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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … a swath of blueprints to find parts that photosynthesizers share. The end result was a list of genes, termed  The …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the … to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … Olpidium are obligate endoparasites of some common crops, such as lettuce and tobacco. Olpidium itself doesn’t cause …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… microbiome science from largely observational to reproducible mechanistic studies.  This conference is inspired by … (EcoFABs) designed for precise manipulation and reproducible experimentation of microbiome dynamics. Together, we will explore cutting-edge advancements in constructing, modeling, and applying these engineered ecosystems …
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Nikos Kyrpides
… bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the … Nat Microbiol . 6(7):960-970. Nayfach S, et al. (2021) CheckV assesses the quality and completeness of … Nature Biotechnol . 39(5):578-585. Nayfach S, et al. (2021) A genomic catalog of Earth’s microbiomes. Nature …
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Boosting Small Molecule Production in Super “Soup”
… strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical output … to keep processes running smoothly. As  reported August 26, 2021, in  Nature Communications , researchers led by Hal … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal … studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations of fungal mitochondrial … its kind ever assembled. The team identified 15 core genes shared across all fungi, and found that some of these genes …
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Integrating Experimentation with Data
… $700    Thanks for joining the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory … poster sessions, thought-provoking flash talks, and instructive workshops. The abstract submission deadline has … The JGI and EMSL are U.S. Department of Energy (DOE) Office of …
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Steven Wilson
… applications that span the lifecycle of activities at JGI - proposal submission and review, project and work order … the JGI as an Instrumentation Engineer where he added structure and process to the group by developing SOPs for … of JGI’s Integrated Tracking System (ITS) and served as the Shared Components Team Lead Data Warehouse and Software …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
… Michelle O’Malley and Tom Lankiewicz of UC Santa Barbara discuss the importance of studying … opens up a new avenue to explore for efficient biofuel production. …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of … the answer provided by Sara 4.  Q(uestion): Are all CSP produced data automatically assembled and run through your … analysis (assemble, annotate, work on initial analysis) and share data in PhycoCosm. For genomes not sequenced by JGI, …
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Yasuo Yoshikuni
… has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the Synthetic Biology … focus includes engineering of non-model yeasts for production of biofuels and renewable chemicals, developing … for building composite materials. Before joining the JGI, Dr. Yoshikuni was co-founder and chief science officer …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … trait for domesticated crops because it leads to reduced harvest yields. Over thousands of years, farmers have … the way to seed but prevent the seeds from falling,” said JGI Plant Program head Jeremy Schmutz , who is also a …
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