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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … CA. Banfield’s observations of the CRISPRs in her microbial sequences piqued Doudna’s interest. As Doudna noted in her …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more complete … Amplification to generate enough DNA to put on a sequencer. As previously mentioned, it’s a method that’s … the DNA sequences came from one cell, including components like plasmids, the picture is far from complete.  In 2021 , …
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JGI Workshops at PAG
Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   … the length and breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, … biology and hear from researchers who are applying genomic sequence information to BER funded activities of plant …
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Filling in the Plant Tree of Life
What if we understood plants and how they adapt to their ever-changing environments better? We could …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a … and distribution of fungal genome datasets. It includes JGI-sequenced and publicly available datasets encompassing a … and researchers, facilitating the transition from genomic sequences to biological inference and understanding of …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between … Because microorganisms live in complex communities, like within soils or the gut, they are difficult to study … individually. Many microorganisms hold clues to processes like biodegradation, with potential applications in industry …
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Microbial life under ice: Metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice‐covered Lakes
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JGI on the 2020 Highly Cited Researchers List
Congratulations to the 2020 Highly Cited Researchers at the JGI! … that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  Nature … from samples provided by more than 200 scientists and sequenced by the JGI through the  Community Science Program, …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required … was really productive,” he said.  Data reporting standards, like Wilhelm’s MISIP framework, were interesting to lots of …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than … about 3 million years ago. The study shows that figure is likely closer to a mere 250,000 years — with many key … locations.  One group investigated changes in protein sequences, while others analyzed single point mutations …
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SpaRC: scalable sequence clustering using Apache Spark
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Improving genome assemblies by sequencing PCR products with PacBio
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