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Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate
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Global patterns of diversity and metabolism of microbial communities in deep-sea hydrothermal vent deposits
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Metagenomic Analysis of Subtidal Sediments from Polar and Subpolar Coastal Environments Highlights the Relevance of Anaerobic Hydrocarbon Degradation Processes
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Laminarin stimulates single cell rates of sulfate reduction whereas oxygen inhibits transcriptomic activity in coastal marine sediment
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… JGI-supported project studying the world’s rivers and their microbial communities. He’s focusing on the Arkansas River … stressors, um, alter microbial biomass and then what the consequences are for the ecosystem. ALISON:  So, Ed is trying … sustainable through applications of microbiome science; our water quality, our water resource needs are, are tightly …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… at Lawrence Berkeley National Laboratory (Berkeley Lab) sequenced 1 trillion bases — a terabase — of soil RNA for … to free up their nutrients; mycorrhizal symbionts shuttle water and nutrients to trees; plant pathogens colonize … At that time, the field had surveyed many different soil communities for taxonomic diversity. These studies could …
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Genomic Comparison of Two Family-Level Groups of the Uncultivated NAG1 Archaeal Lineage from Chemically and Geographically Disparate Hot Springs
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Transcriptional and metabolic stasis define desiccation-induced dormancy in the soil bacterium Arthrobacter sp. AZCC_0090 until water vapor initiates resuscitation
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… at work around the globe Keynote Talk Title : “Wild Microbial Ecology” Microbial ecologist  Bruce Hungate , of … organisms can do. And we need the field’s context to see why it matters.” As his career progressed, Hungate has … these amazing technologies that the JGI has to identify and sequence who’s making what, that the context at a microscale …
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A More Intuitive Phytozome Interface
… Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire Phytozome v12? The codebase … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ … you’re interested in working with are in the PhytoMine set, great, please continue to use that data warehouse. If not, …
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A Natural Mechanism Can Turbocharge Viral Evolution
… The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” … to adapt to changing environments. It also sheds light on why the rapid injection of mutations in a particular gene … all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and is the head …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … metagenomes can I submit?  How deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), …
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