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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and … Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia … ) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science …
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution … a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using proteins on its tail fibers to latch onto a specific target on the … conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute … all the genes within a cell or tissue at a specific time or under specific conditions – in over a dozen plants. To learn …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… speakers who shared a look back at the JGI’s history, from its beginnings in the sequencing for the Human Genome … Research Todd Anderson currently works to support understanding of plants, microbes and environmental … — before stepping into his role as program manager in 2006 when the JGI transitioned from human to microbial genetics. …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence Berkeley National Laboratory (Berkeley Lab), … impacts, carbon cycling, and the microbial dynamics in freshwater lakes over a several year period.” “We’ve been … and we’re preparing for another order of magnitude in scale when running on DOE’s  exascale computing systems,” added …
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JGI & KBase at PAG XXVII
… Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase … (KBase) will be at Booth 509. Stop by and chat with representatives from KBase and the JGI about collaborative science opportunities. Learn how to apply for a project with the JGI …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, … input in the ~ 30 – 100ng range. Note that beyond quantity, input quality (i.e., presence of “intact” … not seen substantial improvement with hybrid assemblies when compared to long-reads-only assemblies, especially with …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a joint Critical Minerals and Materials proposal call . This represents a unique opportunity for researchers to request the capabilities and … Access to the Molecular Foundry and use of JGI capabilities is free. The JGI supports remote users. Users conduct …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon … feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant roots. … Plants provide photosynthesized carbon, while fungi deliver water and nutrients. In order to do so, these organisms …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … candidate phyla, major branches in the phylogenetic tree without cultivated representatives. The “Great Plate-Count … by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of …
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Micro-Scale Applications Group
… explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group … technology in order to enhance the quality of single-cell genomes and directly link functional information with individual cells. Research Team    …
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