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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Vogel Project: Characterization of Brachypodium distachyon root transporters in plant-microbiome interactions ” …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility located at …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for licensing. The Science In  Nature Communications , researchers … The work conducted by the U.S. Department of Energy (DOE) Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from additional parents or …
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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user facility located at … evolution, ecology, genomics and function of microbes and microbiomes, especially those found in association with both …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection of publicly … Combining forces with UC Berkeley to seek elusive gene-editing …
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JGI Announces 2025 New Investigator Portfolio
… Ian Gilman, Louis Graf, Yuxi Guo, Shaomei He, Vayu Hill- Maini, Forrest Lefler, Pok Man (Bob) Leung and Huang Li; … and Mar Schmidt; [bottom] Cody Spiegel, James Tan, Emma Timmins-Schiffman, Andressa M. Venturini, Valentin Waschulin, … fungi, the effects of biochar on rhizosphere microbiomes, and the metabolic pathways of algae. They will …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence Berkeley National Laboratory … Lab), the National Energy Research Scientific Computing Center (NERSC), the DOE Joint Genome Institute (JGI), … that supports “an unprecedented assembly of environmental microbiomes.” JGI’s Chief Informatics Officer  Kjiersten …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different lifestyles. The Science The … , and relying on the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . By analyzing the metagenomes, …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more and more … database that is part of the Integrated Microbial Genomes & Microbiomes (IMG/M) suite, as well as sequences from the … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science …
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life … University of Vienna (Austria) PhD Microbial Ecology and Bioinformatics, University of Vienna (Austria) … Krinos et al. 2024. Time-series metagenomics reveals changing …
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