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Digging into Microbial Ecosystems Deep Underground
… with first author Amundson in the journal Microbiome . The work builds off a proposal approved through a collaborative …
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A Collaboration to Improve Plant Genome Annotations Across Species
… plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for … HudsonAlpha researchers led a team that  recently published work on the JGI Plant Gene Atlas in  Nucleic Acids Research … transcriptomics. *The HudsonAlpha Genome Sequencing Center works with scientists at the JGI a lot. In fact, HudsonAlpha …
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A Grass Model to Help Improve Giant Miscanthus
… by an international, multi-institutional team. The work was a joint effort led by scientists at the Center for … This work was supported by the Energy Biosciences Institute and … Environmental Research under Award Number DE-SC0018420. The work conducted by the U.S. Department of Energy Joint Genome …
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Soil virus offers insight into maintaining microorganisms
… a protein in soil viruses that may promote soil health. The work was enabled in part by a community data portal of the … first place, and what function other AMGs may serve.  The work was enabled in part under the DOE’s collaborative … This work was supported by the Department of Energy (DOE) Office …
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A More Intuitive Phytozome Interface
… Phytozome (and in the BioMart data warehouse). We are still working out the best protocols to allow us to update … in Phytozome v13. If the genome(s) you’re interested in working with are in the PhytoMine set, great, please … in the physical sciences in the United States, and is working to address some of the most pressing challenges of …
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JGI@25: Roots of a Mutualist Relationship
… perspective, involving more multidisciplinary teams. The work also paved the way for a longstanding collaboration …
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JGI on the 2020 Highly Cited Researchers List
… year in the Web of Science.” Less than 6,200 researchers working in 21 fields appear on the list, and those from the … millet ( Setaria viridis ) in  Nature Biotechnology.  The work also led researchers to identify a gene related to seed … in the physical sciences in the United States, and is working to address some of the most pressing challenges of …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… all types of bacteria and interacts with cell signaling networks that control many basic cellular functions. It plays … biosensors for measuring cyclic di-GMP in bacteria through work enabled by the JGI’s Community Science Program (CSP) . … have tried to study cyclic di-GMP and cellular networks with fluorescent biosensors before, but such sensors …
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Enlarging Windows into Understanding Gene Functions
… coauthor Lee did the initial development of a streamlined workflow that reduces the time and cost associated with this … step, and Baumgart continued and expanded on the work known as biotin DAP-seq after she left the JGI. “Biotin … said. “We thought about reconstructing gene regulatory networks, understanding where transcription factors bind in the …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… number of 8X individuals that had been collected from field work. When viewing the full distribution of switchgrass on a … switchgrass for bioenergy production. Building on the framework provided by our new switchgrass manuscript , we plan to …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… the energy they store.      Since 2012, O’Malley has worked with the JGI to understand the enzymes these … fungi wield: the capacity to form enzyme complexes that work like assembly lines for efficiency.  In 2021, her team … at the University of Delaware — is  building on this work to explore an enzymatic ‘toolbox’ of biomass-degrading …
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An Automated Tool for Assessing Virus Data Quality
… tool called CheckV that can automatically do both. The work was led by research scientist Stephen Nayfach, the … The work conducted by the U.S. Department of Energy Joint Genome … of Energy under contract no. DE-AC02-05CH11231. This work was also supported the grant #2016/23218-0 from São …
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