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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
As part of the JGI’s 25th anniversary celebration, the 2022 Annual … sequencing for the Human Genome Project out to the future of the institution. Their talks shed light on how the JGI … are numbers out there, Drell noted, including the figure 30-million fold: How much JGI’s productivity has increased …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most species do not grow easily in the … that were acquired through it were usually only around 30% complete.  Described in  ISME Communications , a method …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… call is open year-round, but proposals submitted by July 30 will be included in the next review. “So webinars like … really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard … the request size, being permitted to request up to 1.5 megabases (MB) of a synthesis, compared to 0.5 MB for a …
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella … and without an inoculation of the  M. elongata strain PM193 added to a diluted soil mixture, publishing  the results …
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2024 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide … secondary users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed 13,700 metabolomics samples …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The collection of the M. sinensis and M. sacchariflorus …
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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory protein. Researchers demonstrated … 18, with the number of factor-gene pairs almost doubling to 399. Two of the 11 sigma factors addressed in the study were …
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JGI at the AGU Fall Meeting
Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): … December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research and tips for … User Facilities in One Proposal via FICUS December 13 8:12 am Convention Center eLightning Theater IV: Kuno …
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Extracting the Secrets of Secondary Metabolites
… survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … User Facility, is supported under contract DE-AC02- 05CH11231. …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley … The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and …
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Graduate Students Get Thesis Research Opportunity at the JGI
Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program awards … at 12 host national laboratories or facilities between 3-12 consecutive months. Their proposed research projects …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the “chytrids”).  A collaborative team … able to assemble ~75% of the Olpidium genome and retrieve ~300 markers for phylogenetic reconstruction . We were also …
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