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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the team focused on Actinobacteria ( Actinomycetota ), a group of bacteria with diverse metabolic activities. Found in … the current shape of the microbial tree of life by filling in genomic information for thousands of branches,” said …
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Training the Next Generation of Talent
… Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. … of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus … student in the Quantitative Systems Biology (QSB) Group under the School of Natural Sciences (SNS). During his …
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Help from Citrus’ Bitter, Hardier Cousin
… to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … fruit, yet sweet are its genetic secrets. This work builds upon JGI-supported research led by Gmitter and JGI’s Daniel …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … Lead with a focus on adapting JGI workloads to run on supercomputing hardware and worked closely with staff to … the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head.  Dr. Fagnan is also …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their derivatives during her Ph.D. in Microbiology at the Eberhard Karls … Scientist appointment at the Bigelow Laboratory for Ocean Sciences since 2012 and an Adjunct Professor at the … Tanja Woyke is the Microbial Science Program Head as well as our Deputy of User Programs. …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… for example, crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying and breeding varieties that have high productivity … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… accurately facilitates microbial genome discoveries. Unlocking the intricate details of life’s genetic blueprint has … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … “Natural language has grammar and structure, and words set up in a certain way. Genomes work in a similar manner. From …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces is more than just a funny … roughly two-thirds of antibiotics, and a deeper understanding of the bacteria potentially holds the key to discovering … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, as well as a member of  its Secondary …
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UC Merced Interns Reflect on Their JGI Summer Projects
… students worked on ranged far and wide — from implementing new data visualization tools, to using natural language processing techniques to categorize … genomics, and to help foster a diverse future workforce in science. Since the program’s inception, more than 30 …
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A Collaboration to Improve Plant Genome Annotations Across Species
… spans 15 years and involves more than 17 research groups. The team set out to characterize the transcriptome – … Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to improve plant … one of which is sweet sorghum Rio from a JGI Community Science Program project and another is Lupinus albus from a …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… potential contributions to a sustainable bioeconomy, including, potentially, methane as an energy source.  Until … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … down potential sources of methanogenesis, with metagenomic support from the JGI. First they were able to identify the …
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JGI at the AGU Fall Meeting
… This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest (all times in …
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