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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 … independently evolved to establish symbiotic relationships with plants (mycorrhizae), and particularly how fungi that … lifestyle. The Impact The analysis enables researchers to understand how plants and fungi developed symbiotic …
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants in yeast … to the results of the sugar-related tests, they pinpointed multiple genes that were previously missed in knock-out … library synthesized by JGI was versatile enough for use in multiple applications. This proof-of-concept experiment …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth … at the University of Hawai’i at Mānoa. I recently caught up with Karolina at the Plant and Animal Genomes, or PAG … the carbon dioxide they need. Karolina is working to better understand what genetic features make CAM possible. So, …
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JGI Announces 2025 New Investigator Portfolio
… Pictured from left: [Top] Bill J. Baker, Jeff Barrick, Ian Gilman, Louis Graf, Yuxi Guo, Shaomei He, Vayu Hill- Maini, Forrest Lefler, Pok Man (Bob) Leung and Huang Li; … Science Program , allows us to work and share our tools with a widening circle of researchers whose work aligns with …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month … challenges. And many JGIers work to connect those big goals with their everyday activities, striving for sustainability … was starting to  use central waste stations, rather than under desk trash bins . These encourage everyone to sort all …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The … is overseeing the SPRUCE (Spruce and Peatland Responses Under Changing Environments) project, assessing how northern … These resources would provide the research community with the ability to address questions such as sphagnum’s …
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements … in situ functional activities of specific microbial groups within complex communities.  The Microscale Applications …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have … ( Panicum virgatum ) is a candidate bioenergy feedstock with a complex genome with multiple copies of its chromosomes. Switchgrass has deep … by the Office of Science of the US Department of Energy under contract no. DE-AC02-05CH11231. The UT Brackenridge …
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Team Science Reveals Important Protein in Poplar
… (BNL) led a team that  identified a protein , PtrbHLH011, within poplar involved in plant growth, lignin production, … resistant to disease compared to the controls.  Analyses to understand how the protein influences poplar responses to nutrient stressors involved collaborators at multiple DOE facilities such as the Center for Functional …
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First Monoploid Reference Sequence of Sugarcane
… one from each parent. In contrast, many crops have multiple sets of chromosomes (they are “polyploid”) and … species, sequencing programs generally focus on a genotype with two identical sets of chromosomes to produce a … complex and more realistic polyploid sugarcane genome now underway as part of the JGI Community Science Program (CSP), …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes … would allow researchers to focus on specific microbes within metagenome samples and associate their sequences with … protocol,  detailed in the journal  Microbiome , combines multiple techniques and was demonstrated using a specific …
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Forming Scientific Connections and Building Community
… (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven graduate students from UC Merced … had to say about their experiences and what they’ll take with them as they go forward in their careers.   Listed … Deze Kong & Yasuo Yoshikuni Project: “ Development of a multiplex genomic integration system for the selection of …
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