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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly … to: Project Manager Kerrie Barry, Cross-Field Category Fungal and Algal Program head Igor Grigoriev , Plant & … on an updated reference genome for Theobroma cacao, the tree that produces cacao beans. The improved cacao genome is …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 … by the community regarding the use of JGI data prior to publication by the principal investigators. To resolve these …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the … genomes available at that time. “Looking across the tree of life, it’s striking how many uncultivated lineages …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired … graduate student Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer … During my internship, I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited speakers shared how research infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new … and so works with samples from areas where humans and wildlife interact. He described these areas as “fault lines” …
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … genes are turned on is known as DNA affinity purification sequencing or DAP-seq. The technology was developed by Ronan … the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We …
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The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex
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Taking Stock of the Known and Unknown Microbial Space
… hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … and bioproducts, and medicine. Wading through 30 years of sequencing data, the team composed of Wu, Seshadri, Nikos …
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Jeremy Schmutz
… human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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Genome resources for three modern cotton lines guide future breeding efforts
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s carbon as well as material that can be … was possibly driven by genetics, or even temperature. By sequencing the genome, researchers were able to pinpoint …
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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user … of the JGI annual user meeting and New Lineages of Life symposia. Bik is a recipient of the Community Science … professor at Michigan State University. He studies fungal biodiversity, ecology, and evolution, with a focus on …
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