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Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum)
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Distinct temporal diversity profiles for nitrogen cycling genes in a hyporheic microbiome
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efam: an expanded, metaproteome-supported HMM profile database of viral protein families.
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Prokaryotic community profiles at different operational stages of a Greek solar saltern
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De novo mutations mediate phenotypic switching in an opportunistic human lung pathogen
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Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing
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Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … years fueling discovery, Anderson looked toward the JGI’s next decades of science with enthusiasm. He pointed toward … in 1997, now takes roughly one second. “It isn’t just the generation of vast troves of data, it’s the new areas of …
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A User-Centered Approach to Accessing JGI Data
… requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … use of our search API. They have expressed an interest in using this to find files based on file metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. …
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Mindfully Moving JGI
… Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years … labs in one long building at Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing … at its peak, all the machines were switched off. Over the next two weeks, they were crated, shipped to, and then …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … scan for those snowflakes, or RNA virus sequences. Using this workflow, the team combed through more than 5,000 … and viruses vastly outnumber the microbes. Advances in sequencing technologies and computational tools have …
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Taking Stock of the Known and Unknown Microbial Space
… hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of microbial genomes becoming available to the global research … of the current state of microbial genomic biodiversity. Using publicly available genome sequence data generated over …
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