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Dan Rokhsar
… After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued to develop … Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell …
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2022 Progress Report
… DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National … of Science user facility at Lawrence Berkeley National Laboratory (Berkeley Lab), is to become the leading … challenges.   Mission  The mission of the JGI is to provide the global research community with access to the …
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Uncovering Novel Genomes from Earth’s Microbiomes
… their genomes can’t be sequenced using traditional approaches. Identifying and characterizing the planet’s … JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Eloe-Fadrosh noted that it was a nice example of … 500,000 existing genomes available at that time. “Looking across the tree of life, it’s striking how many uncultivated …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek to the … of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. … at Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) …
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A One-Stop Shop for Analyzing Algal Genomes
… You now have one place where you can browse the genetic blueprints of these photosynthetic organisms. PhycoCosm is one … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), have unveiled PhycoCosm in the … proteins. PhycoCosm’s built-in connection to the DOE Systems Biology Knowledgebase (KBase) also allows …
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MGM Workshop at Fisabio Summer School 2025
… Register here The workshop is addressed to students and professionals of biology, biomedical research, the health … by means of theoretical lectures and seminars as well as practical hands-on sessions in bioinformatics and … of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Natalia Ivanova and Rekha Seshadri. …
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JGI on the 2020 Highly Cited Researchers List
… in their fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the … Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, … JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Nikos Kyrpides and  Simon Roux are part of a team …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … Science user facility located at Lawrence Berkeley National Laboratory, have collaborated with global researchers on … (i) classifying viruses into groups that can be compared across studies, (ii) predicting which hosts these viruses are …
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MGM Workshop at Fisabio Summer School 2026
… Summer School.  The workshop is addressed to students and professionals of biology, biomedical research, the health … by means of theoretical lectures and seminars as well as practical hands-on sessions in bioinformatics and … of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Rekha Seshadri and Mateus Fiamenghi …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and secondary … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). The accepted proposals come from … Knowledgebase (KBase) , a free, open source data science platform that allows users to explore data and share …
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JGI & KBase at PAG XXVII
… takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will be at Booth 509. Stop by and chat with representatives from KBase and the JGI about collaborative …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) describe a computational pipeline … not just crops, animals and humans, but also microbes whose presence or absence can impact the planet’s nutrient cycles. … “But same as DNA viruses, RNA viruses infect microbes all across the world and lead to cell death and/or profound …
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