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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing libraries from minimal DNA input without amplification. …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science … and dominant populations in oxygen-poor environments without oxygen deep below ground. These archaea fix carbon … of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR …
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An Integrated Dataset to Understand Ecosystem Interaction
… allowed them to then examine the chemicals and small molecules produced by the trees and associated microbial … revealed key metabolic pathways and metabolites associated with the tree’s stress response. Finally, using … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by Selfing
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A User-Centered Approach to Accessing JGI Data
… Users were previously limited to accessing data sets within groups, such as plants (via Phytozome) or fungi ( … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the … sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks the enzymes … components — cellulose, hemicellulose, and the toughest molecule, lignin. Understanding Lentinula genomes and their …
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Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics
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Functional Metagenomics of Spacecraft Assembly Cleanrooms: Presence of Virulence Factors Associated with Human Pathogens
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Ecological Assembly Processes Are Coordinated between Bacterial and Viral Communities in Fractured Shale Ecosystems
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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … a long-standing interest in microbial genetics that started with his education and carried forward into his roles as a … and Leader at Dow AgroSciences in Indianapolis. During his time in industry, Dr. Mouncey directed R&D teams that …
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The Big Deal About Short Plants
… link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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Dan Rokhsar
… and led the computational efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued … and evolutionary analysis of over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics …
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