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Standardized naming of microbiome samples in Genomes OnLine Database.
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Diversity of active viral infections within the Sphagnum microbiome
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Jeremy Schmutz
… human chromosomes 5, 16, and 19. Following the completion of the human genome project in 2003, he developed sequencing, assembly, and improvement strategies for de novo … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters … looking at how communities of these microalgae interact, researchers have found that polar algae rely on dissolved zinc … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … of five previously uncharacterized prokaryotes, including two bacteria isolated by their lab. KBase was used to … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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Cultivating Symbiotic Antarctic Microbes
The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in … biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … graduate student, Joshua Hamm, successfully cultured two strains of Nanohaloarchaeota and showed they required …
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … CSP and the JGI-EMSL FICUS programs and brings expertise in metagenomics and novel applications for long-read DNA sequencing. As a UEC member, Wilbanks will advocate for …
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Neha Varghese
… key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides …
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Building on basic metagenomics with complementary technologies
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Metagenomic analysis of the ET‐743 producer
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A call for standardized classification of metagenome projects
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